chimera.h

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//
// Project NuriKit - Copyright 2026 SNU Compbio Lab.
// SPDX-License-Identifier: Apache-2.0
//
 
#ifndef NURI_TOOLS_CHIMERA_H_
#define NURI_TOOLS_CHIMERA_H_
 
#include <Eigen/Dense>
 
#include "nuri/eigen_config.h"
 
namespace nuri {
struct MmResult {
  Isometry3d xform;
  ArrayXi sel;
  double msd;
};

extern MmResult match_maker(ConstRef<Matrix3Xd> query,
                            ConstRef<Matrix3Xd> templ, double cutoff = 2.0,
                            double global_ratio = 0.1, double viol_ratio = 0.5);
}  // namespace nuri
 
#endif /* NURI_TOOLS_CHIMERA_H_ */